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ngs sequence data  (Biotechnology Information)

 
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    Biotechnology Information ngs sequence data
    Ngs Sequence Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ngs+sequence+data/data+ngs/pmc13031895-284-0-10
    Average 86 stars, based on 1 article reviews
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    Related Articles

    Next-Generation Sequencing:

    Article Title: Baloxavir outperforms oseltamivir, favipiravir, and amantadine in treating lethal influenza A(H5N1) HA clade 2.3.4.4b infection in mice
    Article Snippet: .. NGS sequence data are available on the National Center for Biotechnology Information Sequence Read Archive under PRJNA1416403 BioProject Accession ( https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1416403 ). .. Plaque assay images are available on Figshare at 10.6084/m9.figshare.30918779.

    Article Title: Baloxavir outperforms oseltamivir, favipiravir, and amantadine in treating lethal influenza A(H5N1) HA clade 2.3.4.4b infection in mice.
    Article Snippet: .. NGS sequence data are available on The National Center for Biotechnology Information Sequence Read Archive under PRJNA1416403 BioProject Accession (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1416403). .. Plaque assay images are available on Figshare at https://doi.org/10.6084/m9.figshare.30918779.

    Article Title: Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments
    Article Snippet: .. DATA AVAILABILITY NGS sequence data has been deposited in the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) under accession number GSE110380. ..

    Article Title: Bronchial oncocytic carcinoma in an adult: a case report and literature review.
    Article Snippet: .. The raw NGS sequence data presented in this study can be found online in the National Center for Biotechnology Information repository (SRA: PRJNA935421), https://www.ncbi.nlm.nih.gov/Traces/study/?acc=%20 PRJNA935421&o=acc_s%3Aa. ..

    Article Title: CD83 Modulates B Cell Activation and Germinal Center Responses.
    Article Snippet: .. The NGS sequence data are deposited at the National Center for Biotechnology Information SRA database (http://www.ncbi.nlm. nih.gov/sra, accession no. PRJNA310174). ..

    Article Title: Bronchial oncocytic carcinoma in an adult: a case report and literature review
    Article Snippet: .. The raw NGS sequence data presented in this study can be found online in the National Center for Biotechnology Information repository (SRA: PRJNA935421), https://www.ncbi.nlm.nih.gov/Traces/study/?acc=%20PRJNA935421&o=acc_s%3Aa . ..

    Sequencing:

    Article Title: Baloxavir outperforms oseltamivir, favipiravir, and amantadine in treating lethal influenza A(H5N1) HA clade 2.3.4.4b infection in mice
    Article Snippet: .. NGS sequence data are available on the National Center for Biotechnology Information Sequence Read Archive under PRJNA1416403 BioProject Accession ( https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1416403 ). .. Plaque assay images are available on Figshare at 10.6084/m9.figshare.30918779.

    Article Title: Baloxavir outperforms oseltamivir, favipiravir, and amantadine in treating lethal influenza A(H5N1) HA clade 2.3.4.4b infection in mice.
    Article Snippet: .. NGS sequence data are available on The National Center for Biotechnology Information Sequence Read Archive under PRJNA1416403 BioProject Accession (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1416403). .. Plaque assay images are available on Figshare at https://doi.org/10.6084/m9.figshare.30918779.

    Article Title: Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments
    Article Snippet: .. DATA AVAILABILITY NGS sequence data has been deposited in the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) under accession number GSE110380. ..

    Article Title: Bronchial oncocytic carcinoma in an adult: a case report and literature review.
    Article Snippet: .. The raw NGS sequence data presented in this study can be found online in the National Center for Biotechnology Information repository (SRA: PRJNA935421), https://www.ncbi.nlm.nih.gov/Traces/study/?acc=%20 PRJNA935421&o=acc_s%3Aa. ..

    Article Title: CD83 Modulates B Cell Activation and Germinal Center Responses.
    Article Snippet: .. The NGS sequence data are deposited at the National Center for Biotechnology Information SRA database (http://www.ncbi.nlm. nih.gov/sra, accession no. PRJNA310174). ..

    Article Title: Bronchial oncocytic carcinoma in an adult: a case report and literature review
    Article Snippet: .. The raw NGS sequence data presented in this study can be found online in the National Center for Biotechnology Information repository (SRA: PRJNA935421), https://www.ncbi.nlm.nih.gov/Traces/study/?acc=%20PRJNA935421&o=acc_s%3Aa . ..

    Gene Expression:

    Article Title: Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments
    Article Snippet: .. DATA AVAILABILITY NGS sequence data has been deposited in the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) under accession number GSE110380. ..



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    Data preprocessing workflow. When analyzing NGS datasets with KPop, one can optionally pre-process sequencing reads in order to eliminate biases and/or have the method focus on specific parts of the genome. For instance, one might align reads to a (pan-)genome and separate them into reads that align (likely to originate from the organism being studied) and reads that do not (likely to come from contaminations). Furthermore, reads that do map to the pan-genome might be separated into groups specific to different genomic features; for instance, one might align them to a set of MLST genes or AMR genes. Full k -mer spectra would then be separately obtained from each group of reads (contaminations, pan-genomic, MLST genes, AMR genes) and given as input to downstream/classification methods. The choice of the group of reads from which spectra are computed determines the set of sequences seen by the method, and hence the scope of the classification

    Journal: Genome Biology

    Article Title: KPop: accurate and scalable comparative analysis of microbial genomes by sequence embeddings

    doi: 10.1186/s13059-025-03585-8

    Figure Lengend Snippet: Data preprocessing workflow. When analyzing NGS datasets with KPop, one can optionally pre-process sequencing reads in order to eliminate biases and/or have the method focus on specific parts of the genome. For instance, one might align reads to a (pan-)genome and separate them into reads that align (likely to originate from the organism being studied) and reads that do not (likely to come from contaminations). Furthermore, reads that do map to the pan-genome might be separated into groups specific to different genomic features; for instance, one might align them to a set of MLST genes or AMR genes. Full k -mer spectra would then be separately obtained from each group of reads (contaminations, pan-genomic, MLST genes, AMR genes) and given as input to downstream/classification methods. The choice of the group of reads from which spectra are computed determines the set of sequences seen by the method, and hence the scope of the classification

    Article Snippet: In order to do so, simulated next-generation sequencing (NGS) data was generated for each genome using ART [ ], emulating Illumina HiSeq 2500 paired-end reads of length 150 bp with an average coverage of 20-fold.

    Techniques: Sequencing